10-Q 1 f30110e10vq.htm FORM 10-Q e10vq
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UNITED STATES SECURITIES AND EXCHANGE COMMISSION
Washington, DC 20549
 
Form 10-Q
 
     
þ
  QUARTERLY REPORT PURSUANT TO SECTION 13 OR 15(d) OF THE SECURITIES EXCHANGE ACT OF 1934
    For the quarterly period ended March 31, 2007
     
or
     
o
  TRANSITION REPORT PURSUANT TO SECTION 13 OR 15(d) OF THE SECURITIES EXCHANGE ACT OF 1934
    For the transition period from          to          
 
Commission File Number: 0-29801
 
InterMune, Inc.
(Exact name of Registrant as specified in its charter)
 
     
Delaware
  94-3296648
(State or other jurisdiction of
incorporation or organization)
  (I.R.S. Employer
Identification No.)
 
3280 Bayshore Blvd., Brisbane, California 94005
(Address of principal executive offices including zip code)
 
(415) 466-2200
(Registrant’s telephone number, including area code)
 
Indicate by check mark whether the registrant:  (1) has filed all reports required to be filed by Section 13 or 15(d) of the Securities Exchange Act of 1934 during the preceding 12 months (or for such shorter period that the registrant was required to file such reports), and (2) has been subject to such filing requirements for the past 90 days.  Yes þ     No o
 
Indicate by check mark whether the registrant is a large accelerated filer, an accelerated filer, or a non-accelerated filer. See definition of “accelerated filer and large accelerated filer” in Rule 12b-2 of the Exchange Act. (Check one):
Large accelerated filer o     Accelerated filer þ     Non-accelerated filer o
 
Indicate by check mark whether the registrant is a shell company (as defined in Rule 12b-2 of the Exchange Act).  Yes o     No þ
 
As of April 30, 2007, there were 34,531,784 outstanding shares of common stock, par value $0.001 per share, of InterMune, Inc.
 


 

 
INTERMUNE, INC.
 
QUARTERLY REPORT ON FORM 10-Q
FOR THE QUARTERLY PERIOD ENDED MARCH 31, 2007
 
INDEX
 
                 
Item           Page
 
1.
  Financial Statements:    
    a.   Condensed Consolidated Balance Sheets at March 31, 2007 and December 31, 2006   3
    b.   Condensed Consolidated Statements of Operations for the three months ended March 31, 2007 and 2006   4
    c.   Condensed Consolidated Statements of Cash Flows for the three months ended March 31, 2007 and 2006   5
    d.   Notes to Condensed Consolidated Financial Statements   6
2.
  Management’s Discussion and Analysis of Financial Condition and Results of Operations   14
3.
  Quantitative and Qualitative Disclosures About Market Risk   21
4.
  Controls and Procedures   22
1A.
  Risk Factors   23
6.
  Exhibits   28
  29
 EXHIBIT 31.1
 EXHIBIT 31.2
 EXHIBIT 32.1


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PART I — FINANCIAL INFORMATION
 
Item 1.   Financial Statements
 
INTERMUNE, INC.
 
CONDENSED CONSOLIDATED BALANCE SHEETS
 
                 
    March 31,
    December 31,
 
    2007     2006  
    (Unaudited, in thousands, except per share data)  
 
ASSETS
Current assets:
               
Cash and cash equivalents
  $ 133,934     $ 109,386  
Available-for-sale securities
    77,161       105,163  
Accounts receivable, net of allowances of $107 at March 31, 2007 and $164 at December 31, 2006
    13,209       11,799  
Inventories
    6,317       8,188  
Prepaid expenses and other current assets
    3,009       7,691  
                 
Total current assets
    233,630       242,227  
Property and equipment, net
    9,913       9,210  
Acquired product rights, net
    1,042       1,167  
Other assets
    4,723       4,979  
                 
Total assets
  $ 249,308     $ 257,583  
                 
 
LIABILITIES AND STOCKHOLDERS’ EQUITY (DEFICIT)
Current liabilities:
               
Accounts payable
  $ 10,639     $ 10,572  
Accrued compensation
    5,201       6,181  
Liability under government settlement
    4,975       4,575  
Other accrued liabilities
    17,339       18,975  
                 
Total current liabilities
    38,154       40,303  
Deferred rent
    1,823       1,804  
Deferred collaboration revenue
    65,443       56,732  
Liability under government settlement
    28,541       28,541  
Convertible notes
    170,000       170,000  
Commitments and contingencies (Note 9)
               
Stockholders’ equity:
               
Convertible preferred stock, $0.001 par value; 5,000 shares authorized; no shares issued and outstanding at March 31, 2007 and December 31, 2006, respectively
           
Common stock, $0.001 par value, 70,000 shares authorized; 34,409 and 34,264 shares issued and outstanding at March 31, 2007 and December 31, 2006, respectively
    34       34  
Additional paid-in capital
    534,103       528,116  
Accumulated other comprehensive income
    102       140  
Accumulated deficit
    (588,892 )     (568,087 )
                 
Total stockholders’ equity (deficit)
    (54,653 )     (39,797 )
                 
Total liabilities and stockholders’ equity (deficit)
  $ 249,308     $ 257,583  
                 
 
See accompanying Notes to Condensed Consolidated Financial Statements.


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INTERMUNE, INC.
 
CONDENSED CONSOLIDATED STATEMENTS OF OPERATIONS
 
                 
    Three Months Ended
 
    March 31,  
    2007     2006  
    (Unaudited, in thousands, except per share amounts)  
 
Revenue, net
               
Actimmune®
  $ 19,525     $ 24,356  
Collaboration revenue
    818        
                 
Total revenue, net
    20,343       24,356  
Costs and expenses:
               
Cost of goods sold
    5,284       6,373  
Research and development
    29,439       21,561  
General and administrative
    9,496       10,705  
Restructuring charges
    1,333        
                 
Total costs and expenses
    45,552       38,639  
                 
Loss from operations
    (25,209 )     (14,283 )
Other income (expense):
               
Interest income
    2,700       2,142  
Interest expense
    (714 )     (314 )
Other income (expense)
    2,562       (77 )
                 
Loss from continuing operations
    (20,661 )     (12,532 )
Discontinued operations:
               
Loss from discontinued operations
    (144 )     (254 )
                 
Net loss
  $ (20,805 )   $ (12,786 )
                 
Basic and diluted net loss per share
               
Continuing operations
  $ (0.61 )   $ (0.38 )
Discontinued operations
          (0.01 )
                 
    $ (0.61 )   $ (0.39 )
                 
Shares used in computing basic and diluted net loss per share
    34,063       32,662  
                 
 
See accompanying Notes to Condensed Consolidated Financial Statements.


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INTERMUNE, INC.
 
CONDENSED CONSOLIDATED STATEMENTS OF CASH FLOWS
 
                 
    Three Months Ended
 
    March 31,  
    2007     2006  
    (Unaudited, in thousands)  
 
Cash flows used in operating activities:
               
Net loss
  $ (20,805 )   $ (12,786 )
Adjustments to reconcile net loss to net cash used in operating activities:
               
Amortization and depreciation
    1,181       986  
Stock-based compensation expense
    3,581       4,687  
Change in unrealized gain on foreign currency cash flow hedge
    (107 )     (336 )
Deferred rent
    19       22  
Changes in operating assets and liabilities:
               
Accounts receivable, net
    (1,410 )     6,087  
Inventories
    1,871       2,946  
Other assets
    4,798       (312 )
Accounts payable and accrued compensation
    (2,187 )     (25,979 )
Other accrued liabilities
    (398 )     (5,352 )
Deferred revenue
    9,181        
                 
Net cash used in operating activities
    (4,276 )     (30,037 )
                 
Cash flows from investing activities:
               
Purchases of property and equipment
    (1,550 )     (690 )
Purchases of available-for-sale securities
    (20,100 )     (86,975 )
Sales of available-for-sale securities
    4,201       595  
Maturities of available-for-sale securities
    43,901       9,952  
                 
Net cash provided by (used in) investing activities
    26,452       (77,118 )
Cash flows from financing activities:
               
Proceeds from issuance of common stock, net
    2,372       9,834  
                 
Net cash provided by financing activities
    2,372       9,834  
                 
Net increase (decrease) in cash and cash equivalents
    24,548       (97,321 )
Cash and cash equivalents at beginning of period
    109,386       187,335  
                 
Cash and cash equivalents at end of period
  $ 133,934     $ 90,014  
                 
 
See accompanying Notes to Condensed Consolidated Financial Statements.


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INTERMUNE, INC.
 
NOTES TO CONDENSED CONSOLIDATED FINANCIAL STATEMENTS
(Unaudited)
 
1.   ORGANIZATION
 
Overview
 
InterMune, Inc. (“InterMune,” “the Company,” “we,” “our,” or “us”) is an independent biotechnology company focused on developing and commercializing innovative therapies in pulmonology and hepatology. Our revenue is provided primarily from sales of Actimmune®. We also have preclinical and advanced stage clinical programs in the pulmonology and hepatology areas. As part of our efforts to refocus our corporate strategy, we completed the sale of our Infergen® product, including related intellectual property rights and inventory, in December 2005. As a result of this transaction, Infergen® related activities are reflected as discontinued operations in these financial statements. Effective March 5, 2007 as a result of disappointing trial results, we made the decision to discontinue the Phase 3 INSPIRE clinical trial evaluating Actimmune® in patients with idiopathic pulmonary fibrosis (“IPF”).
 
2.   SUMMARY OF SIGNIFICANT ACCOUNTING POLICIES
 
Basis of Presentation
 
The accompanying unaudited condensed consolidated financial statements have been prepared in accordance with U.S. generally accepted accounting principles for interim financial information. The financial statements include all adjustments (consisting only of normal recurring adjustments) that we believe are necessary for a fair presentation of the periods presented. These interim financial results are not necessarily indicative of results to be expected for the full fiscal year or any other future period.
 
Principles of consolidation
 
The consolidated financial statements include the accounts of InterMune and its wholly-owned subsidiaries, InterMune Canada Inc. and InterMune Ltd. (U.K.). All inter-company accounts and transactions have been eliminated. To date, the financial position and results of operations of InterMune Canada Inc. and InterMune Ltd. (U.K.) have been dormant.
 
Use of estimates
 
The preparation of financial statements in conformity with U.S. generally accepted accounting principles requires management to make estimates and assumptions that affect the reported amounts of assets and liabilities and disclosure of contingent assets and liabilities at the date of the financial statements and the reported amounts of revenue and expenses during the reporting period. Actual results could differ from those estimates and assumptions.
 
We evaluate our estimates and assumptions on an ongoing basis, including those related to reserves for doubtful accounts, returns, charge backs, cash discounts and rebates; excess inventories; inventory purchase commitments; and accrued clinical and preclinical expenses and contingent liabilities. We base our estimates on historical experience and on various other specific assumptions that we believe are reasonable under the circumstances, the results of which form the basis for making judgments about the carrying value of assets and liabilities that are not readily apparent from other sources.
 
Inventory valuation
 
Inventories are stated at the lower of cost or market value. Cost is determined by the specific identification method. Inventories were $6.3 million and $8.2 million at March 31, 2007 and December 31, 2006, respectively, and consisted solely of finished goods.
 
Because of the long lead times required to manufacture our products, we enter into purchase obligations for our inventory requirements. We evaluate the need to provide reserves for contractually committed future purchases of


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INTERMUNE, INC.
 
NOTES TO CONDENSED CONSOLIDATED FINANCIAL STATEMENTS — (Continued)

inventory that may be in excess of forecasted future demand. In making these assessments, we are required to make judgments as to the future demand for current or committed purchases. We are also required to make judgments as to the expiration dates of our products, since our products can no longer be used after their respective expiration dates. As part of our excess inventory assessment for all of our products, we also consider the expiration dates of our products to be manufactured in the future under these purchase obligations.
 
Significant differences between our current estimates and judgments and future commercial and clinical estimated demand for Actimmune® and the useful life of our inventories may result in significant charges for excess inventory or purchase commitments in the future. These differences could have a material adverse effect on our financial condition and results of operations during the period in which we recognize an inventory reserve.
 
Acquired product rights
 
Initial payments for the acquisition of products that, at the time of acquisition, are already marketed or are approved by the U.S. Food and Drug Administration (“FDA”) for marketing are capitalized and amortized ratably over the estimated life of the products, typically ten years. At the time of acquisition, the product life is estimated based upon the term of the agreement, the patent life of the product and our assessment of future sales and profitability of the product. We assess this estimate regularly during the amortization period and adjust the asset value or useful life when appropriate. Initial payments for the acquisition of products that, at the time of acquisition, are under development or are not approved by the FDA for marketing, have not reached technical feasibility and have no foreseeable alternative uses are expensed as research and development costs. Acquired product rights consist of payments made for the acquisition of rights to interferon gamma. Accumulated amortization of this intangible asset was $2.5 million and $2.3 million at March 31, 2007 and December 31, 2006, respectively. Amortization expense for acquired product rights for each of the next three years until fully amortized is expected to be as follows: 2007 — $0.3 million; 2008 — $0.5 million; 2009 — $0.2 million.
 
Impairment of long-lived assets
 
In accordance with SFAS No. 144, “Accounting for the Impairment or Disposal of Long-Lived Assets,” if indicators of impairment exist, we assess the recoverability of the affected long-lived assets by determining whether the carrying value of such assets can be recovered through undiscounted future operating cash flows. If impairment is indicated, we will measure the amount of such impairment by comparing the carrying value of the asset to the present value of the expected future cash flows associated with the use of the asset.
 
Revenue recognition and revenue reserves
 
We recognize revenue generally upon delivery when title passes to a credit-worthy customer and record provisions for estimated returns, rebates, chargebacks and cash discounts against revenue. We are obligated to accept from customers the return of pharmaceuticals that have reached their expiration date. We believe that we are able to make reasonable and reliable estimates of product returns, rebates, chargebacks and cash discounts based on historical experience and other known or anticipated trends and factors. We review all sales transactions for potential rebates, chargebacks and discounts each month and believe that our reserves are adequate. We include shipping and handling costs in cost of goods sold.
 
Our revenue arrangements with multiple elements are divided into separate units of accounting if certain criteria are met, including whether the delivered element has stand-alone value to the customer and whether there is objective and reliable evidence of the fair value of the undelivered items. The consideration we receive is allocated among the separate units based on their respective fair values, and the applicable revenue recognition criteria are applied to each of the separate units. Advance payments received in excess of amounts earned are classified as deferred revenue until earned.


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INTERMUNE, INC.
 
NOTES TO CONDENSED CONSOLIDATED FINANCIAL STATEMENTS — (Continued)

 
Collaboration revenue generally includes upfront license fees and milestone payments. Nonrefundable upfront license fees that require our continuing involvement in the form of research, development, or other commercialization efforts by us are recognized as revenue ratably over the estimated life of the contract. Milestone payments for our collaboration agreement are recognized as revenue when milestones, as defined in the contract, are achieved.
 
Research and development expenses
 
Research and development (“R&D”) expenses include salaries, contractor and consultant fees, external clinical trial expenses performed by contract research organizations (“CRO”), licensing fees and facility and administrative expense allocations. In addition, we fund R&D at research institutions under agreements that are generally cancelable at our option. Research costs typically consist of applied research and preclinical and toxicology work. Pharmaceutical manufacturing development costs consist of product formulation, chemical analysis and the transfer and scale-up of manufacturing at our contract manufacturers. Clinical development costs include the costs of Phase I, II and III clinical trials. These costs, along with the manufacturing scale-up costs, are a significant component of research and development expenses.
 
We accrue costs for clinical trial activities performed by contract research organizations and other third parties based upon the estimated amount of work completed on each study as provided by the CRO. These estimates may or may not match the actual services performed by the organizations as determined by patient enrollment levels and related activities. We monitor patient enrollment levels and related activities using available information; however, if we underestimate activity levels associated with various studies at a given point in time, we could record significant R&D expenses in future periods when the actual activity level becomes known. We charge all such costs to R&D expenses.
 
Collaboration agreements with co-funding arrangements resulting in a net receivable or payable of R&D expenses are recognized as the related R&D expenses by both parties are incurred. The agreement with Hoffmann-LaRoche Inc. and F.Hoffmann-La Roche Ltd (collectively, “Roche”) resulted in a net receivable of approximately $3.2 million at December 31, 2006 and $7.1 million at March 31, 2007, of which $3.2 million was subsequently received in April. See Note 4 below.
 
Net loss per share
 
We compute basic net loss per share by dividing the net loss for the period by the weighted average number of common shares outstanding during the period. We deduct shares subject to repurchase by us from the outstanding shares to arrive at the weighted average shares outstanding. We compute diluted net loss per share by dividing the net loss for the period by the weighted average number of common and common equivalent shares outstanding during the period. We exclude potentially dilutive securities, composed of potential common shares issuable upon the exercise of stock options and common shares issuable upon conversion of our convertible notes, from diluted net loss per share because of their anti-dilutive effect.
 
The securities excluded were as follows (in thousands):
 
                 
    Three Months
 
    Ended March 31,  
    2007     2006  
 
Shares issuable upon exercise of stock options
    5,291       5,013  
Shares issuable upon conversion of convertible notes
    7,859       7,859  


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INTERMUNE, INC.
 
NOTES TO CONDENSED CONSOLIDATED FINANCIAL STATEMENTS — (Continued)

The calculation of basic and diluted net loss per share is as follows (in thousands, except per share data):
 
                 
    Three Months
 
    Ended March 31,  
    2007     2006  
 
Net loss
  $ (20,805 )   $ (12,786 )
                 
Basic and diluted net loss per share:
               
Weighted-average shares of common stock outstanding
    34,329       33,305  
Less: weighted-average shares subject to repurchase
    (266 )     (643 )
                 
Weighted-average shares used in computing basic and diluted net loss per share
    34,063       32,662  
                 
Basic and diluted net loss per share
  $ (0.61 )   $ (0.39 )
                 
 
Stock-Based Compensation
 
We adopted SFAS 123(R) using the modified prospective transition method, which requires the application of the accounting standard as of January 1, 2006. Under the fair value recognition provisions of this statement, stock-based compensation cost is measured at the grant date based on the fair value of the award and is recognized as expense over the vesting period for that portion of the award that is ultimately expected to vest. In order to estimate the value of share-based awards, we use the Black-Scholes model, which requires the use of certain subjective assumptions. The most significant assumptions are our estimates of the expected volatility and the expected term of the award. In addition, judgment is also required in estimating the amount of share-based awards that are expected to be forfeited. In conjunction with the adoption of SFAS 123(R), we changed our method of attributing the value of stock-based compensation to expense from the accelerated multiple-option approach to the straight-line single option method. Stock-based compensation expense recognized under SFAS 123(R) for the three month periods ended March 31, 2007 and 2006 was $3.6 million and $4.7 million, respectively, which consisted of stock-based compensation expense related to employee stock options, restricted stock and the Employee Stock Purchase Plan (“ESPP”). For the three month period ended March 31, 2007, approximately $1.8 million each has been recorded in research and development (R&D) expense and in general and administrative (G&A) expense. For the three month period ended March 31, 2006, approximately $2.1 million has been recorded in R&D expense and the remaining $2.6 million has been recorded in G&A expense.
 
Recent Accounting Pronouncements
 
In September 2006, the FASB issued Statement of Financial Accounting Standards No. 157 (“SFAS 157”), “Fair Value Measurements,” which defines fair value, establishes guidelines for measuring fair value and expands disclosures regarding fair value measurements. SFAS 157 does not require any new fair value measurements but rather eliminates inconsistencies in guidance found in various prior accounting pronouncements. SFAS 157 is effective for fiscal years beginning after November 15, 2007. Earlier adoption is permitted, provided the company has not yet issued financial statements, including for interim periods, for that fiscal year. We are currently evaluating the impact of SFAS 157, but do not expect the adoption of SFAS 157 to have a material impact on our consolidated financial position, results of operations or cash flows.
 
3.   ASSET IMPAIRMENT AND RESTRUCTURING CHARGES
 
Effective March 5, 2007, we made the decision to discontinue the Phase 3 INSPIRE clinical trial evaluating Actimmune® in patients with IPF based upon the recommendation of the study’s independent data monitoring committee. As a result of the disappointing INSPIRE trial results, we revised our estimates of inventory requirements as of December 31, 2006. Accordingly, we recorded a charge of $4.5 million during 2006 related


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INTERMUNE, INC.
 
NOTES TO CONDENSED CONSOLIDATED FINANCIAL STATEMENTS — (Continued)

to the prepayment of inventory that we were expecting to receive in 2007 and 2008. While we believe other Actimmune® related assets are recoverable for at least their $7.4 million net carrying value, if sales decline below our revised estimates, we may incur additional asset impairment charges, including inventory writedowns and impairment of acquired product rights, as well as product returns.
 
The following table reflects the asset balances as of March 31, 2007 which may be impacted (in thousands):
 
         
    March 31,
 
    2007  
 
Finished goods inventory
  $ 6,317  
Acquired product rights, net
    1,042  
         
Total
  $ 7,359  
         
 
We also expect to incur approximately $3.5 million in restructuring charges during 2007, of which approximately $1.3 million has been incurred through March 31, 2007, primarily consisting of severance related expenses to implement our announced plan to reduce the workforce by approximately 50%. In addition, we may incur termination fees related to our supplier and clinical research organization contracts. Any or all of these remaining charges could be material, individually or collectively.
 
The activity in accrued restructuring, included within accrued compensation on the balance sheet, was as follows for the three month period ended March 31, 2007 (in thousands):
 
                                 
    Restructuring
                Restructuring
 
    Liabilities at
                Liabilities at
 
    December 31,
    Severance
    Cash
    March 31,
 
    2006     Charges     Payments     2007  
 
Workforce reduction
  $     $ 1,333     $     $ 1,333  
 
4.   ROCHE COLLABORATION
 
In October 2006 we entered into an Exclusive License and Collaboration Agreement (the “Collaboration Agreement”) with Roche. Under the Collaboration Agreement, we will collaborate with Roche to develop and commercialize products from our HCV protease inhibitor program. The Collaboration Agreement includes our lead candidate compound ITMN-191, which entered Phase 1a clinical trials late in 2006. We also agreed to collaborate with Roche on a research program to identify, develop and commercialize novel second-generation HCV protease inhibitors.
 
Under the terms of the Collaboration Agreement, we agreed to conduct Phase I studies for ITMN-191, and thereafter Roche agreed to lead clinical development and commercialization. Upon closing, we received an upfront payment of $60.0 million from Roche. In addition, assuming successful development and commercialization of ITMN-191 in the United States and other countries, we could potentially receive up to $470.0 million in milestone payments, of which $10.0 million has been received in January 2007. The $70.0 million in aggregate payments received from Roche through March 31, 2007 have been deferred and are being recognized ratably as collaboration revenue over the estimated life of the agreement. Future milestone payments will be recognized as revenue when milestones, as defined in the contract, are achieved. Roche agreed to fund 67% of the global development costs of ITMN-191 and, if the product is approved for commercialization by the U.S. Food and Drug Administration, we agreed to co-commercialize the product in the United States and share profits on a 50-50 basis with Roche. We will receive royalties on any sales of the product outside of the United States. We have the right to opt-out of either co-development and/or co-commercialization of ITMN-191 in exchange for higher royalties on sales outside of the United States, and royalties instead of profit sharing in the United States. The economic terms for ITMN-191 could also apply to additional compounds that we and Roche develop under the Collaboration Agreement.


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INTERMUNE, INC.
 
NOTES TO CONDENSED CONSOLIDATED FINANCIAL STATEMENTS — (Continued)

 
5.   ORITAVANCIN DIVESTITURE
 
In 2001, we entered into an asset purchase and license agreement with Eli Lilly pursuant to which we acquired worldwide rights to oritavancin. The agreement provided us with exclusive worldwide rights to develop, manufacture and commercialize oritavancin.
 
In December 2005, we sold the oritavancin compound to Targanta Therapeutics (“Targanta”), a development stage biopharmaceutical company . The terms of the agreement included upfront and clinical related contingent milestone payments of up to $9.0 million, of which $4.0 million has been received through March 31, 2007. We also received a convertible promissory note that, assuming certain clinical milestones were achieved, could have been valued at up to $25.0 million in principal amount from Targanta, which note was initially secured by the oritavancin assets. Upon the achievement by Targanta of certain corporate objectives, the notes were designed to convert into capital stock of Targanta, subject to certain limitations in the amount of voting stock that we may hold. Based on Targanta’s early stage of development, significant uncertainty existed regarding the realization of the convertible promissory note, and thus we had fully reserved this amount at December 31, 2006 and prior. Effective February 2007, the corporate objectives have been met by Targanta and, upon conversion of the promissory note, we now hold approximately 1.7 million shares of Targanta Series C preferred stock. Our investment in Targanta is recorded at zero, given the continued uncertainty regarding the realization of this asset at March 31, 2007.
 
6.   DISCONTINUED OPERATIONS
 
We entered into a Product Acquisition Agreement (the “Agreement”) with a wholly-owned subsidiary of Valeant Pharmaceuticals Corporation (“Valeant”) on November 28, 2005, whereby Valeant agreed to purchase all of the rights to Infergen® from us. Valeant agreed to acquire certain assets, including intellectual property rights and inventory, as of December 30, 2005 for approximately $122.6 million, including a fixed payment of approximately $2.6 million received in January 2007. Of the $122.6 million, $6.5 million is related to the purchase of finished product inventory. The Agreement also states that we are entitled to receive approximately $20.0 million contingent upon Valeant achieving certain clinical related milestones beginning in 2007. Discontinued operations in 2007 and 2006 consist of transition related services, primarily related to product returns in excess of our initial estimates.
 
7.   COMPREHENSIVE LOSS
 
Comprehensive loss is comprised of net loss and other comprehensive income (loss). We include in other comprehensive income (loss) changes in the fair value of derivatives designated as effective foreign currency cash flow hedges and unrealized gains and losses on our available-for-sale securities. Comprehensive loss is as follows (in thousands):
 
                 
    Three Months Ended
 
    March 31,  
    2007     2006  
 
Net loss
  $ (20,805 )   $ (12,786 )
Change in unrealized gain (loss) on available-for-sale securities
    69       (86 )
Change in realized and unrealized gain on foreign currency hedge
    (107 )     (336 )
                 
Comprehensive loss
  $ (20,843 )   $ (13,208 )
                 


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INTERMUNE, INC.
 
NOTES TO CONDENSED CONSOLIDATED FINANCIAL STATEMENTS — (Continued)

Accumulated other comprehensive income consists of the following (in thousands):
 
                 
    March 31,
    December 31,
 
    2007     2006  
 
Net unrealized loss on available-for-sale securities
  $ (3 )   $ (72 )
Gain on foreign currency hedge
    105       212  
                 
Accumulated other comprehensive income
  $ 102     $ 140  
                 
 
8.   CONVERTIBLE SENIOR NOTES
 
In February 2004, we issued 0.25% convertible senior notes due March 1, 2011 in an aggregate principal amount of $170.0 million (the “Senior Notes”). The Senior Notes are convertible into our common stock at the option of the holder at a conversion price of approximately $21.63 per share, subject to adjustment in certain circumstances. Interest on the Senior Notes is payable semiannually in arrears on March 1 and September 1 of each year. The Senior Notes are unsecured and rank on parity with all existing and future senior unsecured debt and prior to all subordinated indebtedness. In addition, the Senior Notes are effectively subordinated to any existing and future secured debt to the extent of the value of the collateral securing such debt. As of March 31, 2007, we had no other secured debt or senior obligations. Offering expenses of $5.8 million related to the sale of the Senior Notes were recorded in other assets and are being amortized to interest expense using the effective interest method over the term of the Senior Notes, which is seven years from the date of issuance. Accumulated amortization at March 31, 2007 and December 31, 2006 was $2.6 million and $2.4 million, respectively.
 
9.   COMMITMENTS AND CONTINGENCIES
 
Purchase Commitments
 
In 2000, we entered into an agreement with BI for the clinical and commercial supply of Actimmune®. The agreement, which has been amended from time to time, generally provides for the exclusive supply by BI and exclusive purchase by us of Actimmune®. Our contractual obligation to BI is denominated in euros. Prior to the failure of the INSPIRE trial, we had future purchase obligations of approximately $91.6 million. Given the fact that the Phase 3 INSPIRE trial was unsuccessful and discontinued in March 2007, in accordance with certain provisions of the contract, we have notified BI that we have cancelled our existing purchase obligations and previously provided forecasts which included supply quantities related to the IPF indication. We have placed a new and reduced order for our forecasted needs of Actimmune® for its approved indications; severe, malignant osteopetrosis and chronic granulomatous disease. In accordance with certain provisions of the contract, we may be responsible for those reasonable, documented financial obligations incurred by BI prior to our notice of cancellation and other costs. At this time, we can not estimate what these obligations are, if any.
 
Contingent Payments
 
We may be required to make contingent milestone payments to the owners of our licensed products or the suppliers of our drug compounds in accordance with our license, commercialization and collaboration agreements in the aggregate amount of $75.6 million if all of the milestones per the agreements are achieved. These milestones include development, regulatory approval, commercialization and sales milestones.
 
10.   DISCLOSURES ABOUT SEGMENTS OF AN ENTERPRISE AND RELATED INFORMATION
 
We have determined that, in accordance with SFAS No. 131, we operate in one segment, because operating results are reported only on an aggregate basis to our chief operating decision makers. We currently market Actimmune® in the United States for the treatment of chronic granulomatous disease and severe, malignant osteopetrosis.


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INTERMUNE, INC.
 
NOTES TO CONDENSED CONSOLIDATED FINANCIAL STATEMENTS — (Continued)

 
Our net revenue for the three months ended March 31, were as follows (in thousands):
 
                 
    Three Months Ended
 
    March 31,  
    2007     2006  
 
Actimmune®
  $ 19,525     $ 24,356  
Collaboration revenue
    818        
                 
Total net revenue
  $ 20,343     $ 24,356  
                 
 
Our net revenue by region for the three months ended March 31, were as follows (in thousands):
 
                 
    Three Months Ended
 
    March 31,  
    2007     2006  
 
United States
  $ 19,508     $ 24,319  
Other countries
    835       37  
                 
Total net revenue
  $ 20,343     $ 24,356  
                 
 
Our revenue and trade receivables are concentrated with a few customers. We perform credit evaluations on our customers’ financial condition and limit the amount of credit extended. However, we generally do not require collateral on accounts receivable. Concentrations of credit risk, with respect to accounts receivable, exist to the extent of amounts presented in the financial statements. One customer represented 57% of total accounts receivable at March 31, 2007, and three customers represented 45%, 27% and 13%, respectively, of total accounts receivable at December 31, 2006. No other customer represented more than 10% of accounts receivable at March 31, 2007 or December 31, 2006.
 
Revenue from customers representing 10% or more of total revenue during the three month periods ended March 31, 2007 and 2006, was as follows:
 
                 
    Three Months Ended
 
    March 31,  
Customer
  2007     2006  
 
CuraScript, Inc. (formerly Priority Healthcare)
    49 %     62 %
Caremark
    24 %     21 %
Merck Medco
    11 %     9 %
 
11.   INCOME TAXES
 
We adopted the provisions of Financial Accounting Standards Board (“FASB”) Interpretation No. 48, Accounting for Uncertainty in Income Taxes — an interpretation of FASB Statement No. 109 (“FIN 48”) on January 1, 2007. FIN 48 requires companies to determine whether it is “more likely than not” that a tax position will be sustained upon examination by the appropriate taxing authorities before any tax benefit can be recorded in the financial statements. It also provides guidance on the recognition, measurement, classification and interest and penalties related to uncertain tax positions. The adoption of FIN 48 did not have an impact on our results of operations or financial condition. At the adoption date of January 1, 2007, we had no unrecognized tax benefits.
 
We file income tax returns in the U.S. federal and various state and local jurisdictions. We are not currently under examination by federal, state or local taxing authorities for any open tax years. The tax years 1998 through 2006 remain open to examination by the major taxing authorities to which we are subject. We record interest related to uncertain tax positions as interest and any penalties are recorded as other expense in our statement of operations.


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Item 2.   Management’s Discussion and Analysis of Financial Condition and Results of Operations.
 
Forward-Looking Statements
 
This Quarterly Report on Form 10-Q (the “Report”) contains certain information regarding our financial projections, plans and strategies that are forward-looking statements within the meaning of Section 27A of the Securities Act of 1933, as amended, and Section 21E of the Securities Exchange Act of 1934, as amended. These statements involve substantial risks and uncertainty. You can identify these statements by forward-looking words such as “may,” “will,” “expect,” “intend,” “anticipate,” “believe,” “estimate,” “plan,” “could,” “should,” “continue” or the negative of such terms or similar words or expressions. These forward-looking statements may also use different phrases.
 
We have based these forward-looking statements on our current expectations and projections about future events. These forward-looking statements, which are subject to risks, uncertainties and assumptions about us, may include, among other things, statements which address our strategy and operating performance and events or developments that we expect or anticipate will occur in the future, including, but not limited to, statements in the discussions about:
 
  •  product and product candidate development;
 
  •  governmental regulation and approval;
 
  •  sufficiency of our cash resources;
 
  •  future revenue, including those from product sales and collaborations, and future expenses;
 
  •  our research and development expenses and other expenses;
 
  •  the timing and payment of settlement amounts pursuant to our Civil Settlement Agreement with the government and potential restrictions on our business related to the Deferred Prosecution Agreement and Corporate Integrity Agreement with the government;
 
  •  the timing and payment of milestone payments under the Collaboration Agreement with Roche; and
 
  •  our operational and legal risks.
 
You should also consider carefully the statements under the heading “Risk Factors” below, which address additional factors that could cause our results to differ from those set forth in the forward-looking statements. Any forward-looking statements are qualified in their entirety by reference to the factors discussed in this Report, including those discussed in this Report under the heading “Risk Factors” below. Because of the factors referred to above, as well as the factors discussed in this Report under the heading “Risk Factors” below, could cause actual results or outcomes to differ materially from those expressed in any forward-looking statements made by us or on our behalf, you should not place undue reliance on any forward-looking statement. Further, any forward-looking statement speaks only as of the date on which it is made, and we undertake no obligation to update any forward-looking statement to reflect events or circumstances after the date on which the statement is made or to reflect the occurrence of unanticipated events. New factors emerge from time to time, and it is not possible for us to predict which factors will arise. In addition, we cannot assess the impact of each factor on our business or the extent to which any factor, or combination of factors, may cause actual results to differ materially from those contained in any forward-looking statements. When used in the Report, unless otherwise indicated, “InterMune,” “we,” “our” and “us” refers to InterMune, Inc.
 
Critical Accounting Policies
 
Our discussion and analysis of our financial condition and results of operations are based upon our consolidated financial statements, which have been prepared in accordance with U.S. generally accepted accounting principles. The preparation of these financial statements requires us to make estimates and assumptions that affect the reported amounts of assets, liabilities, revenue and expenses, and related disclosure of contingent assets and liabilities. We base our estimates on historical experience and on various other assumptions that we believe are reasonable. These estimates are the basis for our judgments about the carrying values of assets and liabilities, which


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in turn may impact our reported revenue and expenses. Actual results may differ from these estimates under different assumptions or conditions.
 
An accounting policy is deemed to be critical if it requires an accounting estimate to be made based on assumptions about matters that are highly uncertain at the time the estimate is made, and if different estimates that reasonably could have been used, or changes in the accounting estimate that are reasonably likely to occur periodically, could materially change the financial statements. We believe there have been no significant changes during the three month period ended March 31, 2007 to the items that we disclosed as our critical accounting policies and estimates under Item 7, “Management’s Discussion and Analysis of Financial Condition and Results of Operations,” in our Annual Report on Form 10-K for the year ended December 31, 2006.
 
Company Overview
 
We are a biotech company focused on developing and commercializing innovative therapies in pulmonology and hepatology. Pulmonology is the field of medicine concerned with the diagnosis and treatment of lung conditions. Hepatology is the field of medicine concerned with the diagnosis and treatment of disorders of the liver. We were incorporated in California in 1998 and reincorporated in Delaware in 2000 upon becoming a public company. During the past several years, we have reorganized our business by curtailing new investment in non-core areas and focusing our development and commercial efforts in pulmonology and hepatology. During 2005, we divested the Amphotec® (amphotericin B cholesteryl sulfate complex for injection) product as well as the oritavancin compound. Until December 2005, our revenue base was provided primarily from the sales of two products, Actimmune® (interferon gamma-1b) and Infergen® (consensus interferon alfacon-1). As part of our efforts to refocus our corporate strategy, we completed the sale of the Infergen® product, including related intellectual property rights and inventory, to a wholly-owned subsidiary of Valeant in December 2005, for approximately $120.0 million in cash, of which $6.5 million was attributed to the purchase of finished product inventory. As part of this transaction, we received a $2.6 million promissory note from Valeant due and paid to us in 2007 and may also receive up to approximately $20.0 million in clinical related contingent milestone payments beginning in 2007. Concurrent with the above transaction, we made the decision to significantly reduce our investment in field-based IPF disease awareness activities, which, when combined with the sale of our Infergen® assets, led to a significant headcount reduction of approximately 160 full time equivalent employees and resulting termination costs of approximately $9.2 million. As a result of these decisions made during the latter part of 2005, we have had the following key development programs in place throughout 2006: Actimmune® for IPF (which, effective March 2007, has been discontinued), pirfenidone for IPF, the chronic hepatitis C virus (“HCV”) protease inhibitor program and a new target in hepatology. In October 2006, we entered into a Collaboration Agreement with Roche to develop and commercialize products from our HCV protease inhibitor program, including our lead candidate compound ITMN-191. In October 2006, we also reached a comprehensive settlement with the government concerning promotional activities for Actimmune® by former employees during a period that ended in June 2003. We recorded a $36.9 million charge during 2006 to reflect the final terms of the civil settlement agreement. The settlement resolves all outstanding government investigations of InterMune without criminal sanctions. We agreed to pay a total of $36.9 million, plus 5% interest on the then outstanding principal balance, over a period of five years. As part of the settlement, we also entered into corporate integrity and deferred prosecution agreements with the government. We have sustained losses in every year since inception and, as of March 31, 2007, we had an accumulated deficit of $588.9 million.
 
Approved Product
 
Our sole approved product is Actimmune® (interferon gamma-1b), approved for the treatment of patients with severe, malignant osteopetrosis and chronic granulomatous disease (“CGD”). For the three month period ended March 31, 2007, Actimmune® accounted for all of our product revenue, and substantially all of this revenue was derived from physicians’ prescriptions for the off-label use of Actimmune® in the treatment of IPF.


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Research Programs
 
  •  Hepatology
 
We have a preclinical research program in the hepatology area. In September 2002, we entered into a drug discovery collaboration agreement with Array BioPharma, Inc. (“Array”) to discover novel small molecule protease inhibitors for the treatment of hepatitis C. In late 2004, we amended the Array agreement to provide for the acquisition of certain intellectual property rights from Array. In April 2005, we initiated a second research collaboration with Array with respect to a new hepatology target and have since terminated that agreement.
 
Results from scientific studies presented at the Digestive Disease Week medical conference in May 2005 have identified protease inhibitors as a promising therapeutic class. In 2005, we presented several abstracts demonstrating high potency, favorable pharmacokinetics, including uptake into the liver, and encouraging tolerability for our two lead oral HCV protease inhibitor compounds. In the third quarter of 2005, we chose “ITMN 191” (formerly known as ITMN B) as our lead compound and have advanced this compound through toxicology and other clinical trial authorization-enabling studies. We submitted a Clinical Trial Authorisation (“CTA”) with the French Medicinal and Biological Products Evaluation Directorate for this lead compound during the third quarter of 2006. In addition, we are pursuing research related to other small molecules for follow-on compounds to ITMN 191 as well as second-generation protease inhibitors. Under the Collaboration Agreement with Roche, we will collaborate to develop and commercialize products from our HCV protease inhibitor program, including our lead candidate compound ITMN-191, which entered Phase 1a clinical trials late in 2006, and novel second-generation HCV protease inhibitors.
 
  •  Pulmonology
 
We have a preclinical research program in pulmonology. In September 4, 2001 we entered into a license and collaboration agreement with Maxygen Holdings Ltd., a wholly owned subsidiary of Maxygen, Inc., to develop and commercialize novel, next generation interferon gamma products that have enhanced pharmacokinetics and a potential for less frequent dosing regimens than Actimmune®.
 
Development Programs
 
We have a late-stage development pipeline in the pulmonology area and an early-stage pipeline in the hepatology area.
 
  •  Pulmonology
 
In pulmonology, we are developing a single therapy for the treatment of IPF. IPF is a fatal disease characterized by progressive scarring, or fibrosis, of the lungs, which leads to the deterioration and destruction of lung function. There is no FDA approved therapy for IPF. Although conclusive data does not exist, we estimate that approximately 83,000 people suffer from IPF in the United States. We are developing one clinically advanced compound for the treatment of IPF, pirfenidone.
 
We are developing pirfenidone for the treatment of IPF. In 2005 we finalized the design of a Phase III clinical program for pirfenidone (otherwise known as the “CAPACITY” program) after receiving input from the FDA and the European Medicines Agency (“EMEA”). This program is designed to enroll approximately 580 patients with mild to moderate forms of IPF in two separate, concurrent multi-national Phase III trials. The primary endpoint of these trials is lung function, as measured by change in forced vital capacity (“FVC”), which is believed to be an important measure of disease progression. Phase II studies of pirfenidone suggest that pirfenidone may be effective in preventing a decline in lung function and disease progression. On April 27, 2006 we announced that we had initiated the CAPACITY program by enrolling the first patient in the program and have continued to make progress throughout 2006 towards our goal of enrolling approximately 580 patients. In March 2007, we announced our intent to refine and expand the CAPACITY program to include an increase in the number of patients as well as treatment duration.
 
We initiated a second Phase III clinical trial of Actimmune® for the treatment of patients with mild to moderate IPF (otherwise known as the “INSPIRE” trial) in December 2003. Effective March 2007, we discontinued the Phase III INSPIRE trial based upon the recommendation of the study’s independent data monitoring committee


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(DMC). In a planned interim analysis that included a total of 115 deaths, the DMC found the overall survival result crossed a predefined stopping boundary for lack of benefit of Actimmune® relative to placebo. Among the 826 randomized patients, there was not a statistically significant difference between treatment groups in overall mortality (14.5% in the Actimmune group as compared to 12.7% in the placebo group). Based on a preliminary review of the interim safety data, the adverse events associated with Actimmune® therapy appeared generally consistent with prior clinical experience, including constitutional symptoms, neutropenia and possibly pneumonia. As a result of the disappointing INSPIRE trial results, we revised our estimates of inventory requirements as of December 31, 2006. Accordingly, we recorded a charge of $4.5 million in 2006 related to the prepayment of inventory that we were expecting to receive in 2007 and 2008. While we believe other Actimmune® related assets are recoverable for at least their $7.4 million net carrying value, if sales decline below our revised estimates, we may incur asset impairment charges, including inventory writedowns and impairment of acquired product rights, as well as product returns. Further, we may incur termination fees related to our supplier and clinical research organization contracts.
 
  •  Hepatology
 
Our second area of focus is developing therapeutics in the area of hepatology. Our development efforts in hepatology are currently directed at expanding treatment options for patients suffering from HCV infections. Prior to the end of 2005, we were focusing our hepatology efforts on the PEG non-responder population. We have now decided to focus our investments on small molecules, the first of which is our protease inhibitor program which we believe could have a broad application in the overall HCV patient population.
 
Product Development Status
 
The following chart shows the status of our product development programs as of March 31, 2007:
 
                                 
    Preclinical     Phase I     Phase II     Phase III  
 
Pulmonology
                               
Pirfenidone — Idiopathic pulmonary fibrosis (CAPACITY)
                            X  
Pirfenidone analog
    X                          
Next generation gamma interferon
    X                          
Hepatology
                               
ITMN-191 — Chronic hepatitis C program; protease inhibitor
            X                  
Next generation protease inhibitor
    X                          
Second target in hepatology
    X                          
 
Results of Operations
 
Revenue
 
Total revenue was $20.3 million and $24.4 million for the three-month periods ended March 31, 2007 and 2006, respectively, representing a decrease of 16%. This decrease was primarily attributable to a decrease in sales of Actimmune® which was partially offset by $0.8 million of collaboration revenue resulting from the October 2006 agreement with Roche. For the three-month periods ended March 31, 2007 and 2006, sales of Actimmune®, which declined 20% on a year over year basis, accounted for all of our net product revenue. Substantially all of this revenue was derived from physicians’ prescriptions for the off-label use of Actimmune® in the treatment of IPF.
 
There are a number of variables that impact Actimmune® revenue including, but not limited to, the discontinuation of the Phase 3 INSPIRE clinical trial, the level of enrollment in IPF clinical trials of other companies, new patients started on therapy, average duration of therapy, new data on Actimmune® or other products presented at medical conferences and publications in medical journals, reimbursement and patient referrals from physicians.


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Cost of goods sold
 
Cost of goods sold included product manufacturing costs, royalties and distribution costs. Cost of goods sold were $5.3 million and $6.4 million for the three-month periods ended March 31, 2007 and 2006, respectively. The gross margin percentage for our products was 73% and 74% for these periods in 2007 and 2006, respectively. Each three-month period includes approximately $0.1 million related to the amortization of acquired product rights.
 
Research and development expenses
 
Research and development expenses were $29.4 million and $21.6 million for the three-month periods ended March 31, 2007 and 2006, respectively, representing an increase of $7.9 million or 37%. The increase in spending for the three-month period ended March 31, 2007 compared with the same period in 2006 was primarily due to patient enrollment in CAPACITY, our Phase 3 clinical development program in IPF, which began in April 2006.
 
The following table lists our current product development programs and the research and development expenses recognized in connection with each program during the indicated periods. The category title “Programs-Non specific” is comprised of facilities, personnel costs that are not allocated to a specific development program or discontinued programs and $1.8 million and $2.1 million of stock-based compensation in 2007 and 2006, respectively. Our management reviews each of these program categories in evaluating our business. For a discussion of the risks and uncertainties associated with developing our products, as well as the risks and uncertainties associated with potential commercialization of our product candidates, see the Risk Factors below including those under the headings “Risks Related to the Development of Our Products and Product Candidates” and “Risks Related to Manufacturing and Our Dependence on Third Parties.”
 
Our development program expenses for the three month periods ended March 31, were as follows (in thousands):
 
                 
Development Program
  2007     2006  
 
Pulmonology
  $ 17,611     $ 9,196  
Hepatology
    5,485       5,115  
Oncology
          1,611  
Programs — Non-specific
    6,343       5,639  
                 
Total
  $ 29,439     $ 21,561  
                 
 
A significant component of our total operating expenses is our ongoing investments in research and development and, in particular, the clinical development of our product pipeline. The process of conducting the clinical research necessary to obtain FDA approval is costly, time consuming, and variable with respect to the timing of expense recognition. Current FDA requirements for a new human drug to be marketed in the United States include:
 
  •  the successful conclusion of preclinical laboratory and animal tests, if appropriate, to gain preliminary information on the product’s safety;
 
  •  the filing by the FDA of an IND application to conduct human clinical trials for drugs;
 
  •  the successful completion of adequate and well-controlled human clinical investigations to establish the safety and efficacy of the product for its recommended use; and
 
  •  the submission by a company and acceptance and approval by the FDA of an NDA or BLA for a drug product to allow commercial distribution of the drug for the approved indication.
 
Based on our existing budgeted programs and including the impact of SFAS 123(R), we expect research and development expenses to be in a range of $100.0 million to $110.0 million in 2007.
 
General and administrative expenses
 
General and administrative expenses were $9.5 million and $10.7 million for the three-month periods ended March 31, 2007 and 2006, respectively, representing a decrease of $1.2 million, or 11%. The decreased spending for the three-month periods ended March 31, 2007 compared with the same period in 2006 was primarily attributable to


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headcount reductions. In 2007, including the impact of SFAS 123(R), we expect general and administrative expenses to be in a range of $25.0 million to $35.0 million.
 
Restructuring charges
 
Effective March 5, 2007, we made the decision to discontinue the Phase 3 INSPIRE clinical trial evaluating Actimmune® in patients with IPF based upon the recommendation of the study’s independent data monitoring committee. As a result of the disappointing INSPIRE trial results, we announced initiatives to reduce our operating expenses. In connection with those initiatives, we expect to incur approximately $3.5 million in restructuring charges during 2007, of which approximately $1.3 million has been incurred through March 31, 2007. These costs primarily consist of severance related expenses to implement our announced plan to reduce the workforce by approximately 50%. In addition, we may incur termination fees related to our supplier and clinical research organization contracts. Any or all of these remaining charges could be material, individually or collectively.
 
Interest income
 
Interest income increased to $2.7 million for the three-month period ended March 31, 2007, compared to $2.1 million for the three-month period ended March 31, 2006. This increase in interest income reflects increasing investment yields on our cash and short-term investments resulting from higher market interest rates.
 
Interest expense
 
Interest expense increased to $0.7 million in the first quarter of 2007 from $0.3 million in the first quarter of 2006. The $0.4 million increase reflects interest expense recorded in connection with our liability under the government settlement reached in October 2006. Interest expense for each of the reported periods also includes our outstanding $170.0 million 0.25% convertible senior notes due in March 2011 and includes amortization of debt issuance costs.
 
Other income (expense)
 
Other income (expense) was $2.4 million for the three-month period ended March 31, 2007 compared to other expense of $0.1 million for the three-month period ended March 31, 2006. Other income for the three-month period ended March 31, 2007 includes $2.5 million in aggregate milestone payments in connection with our divestitures of oritavancin and Amphotec® in 2005.
 
Loss from Discontinued Operations
 
The loss from discontinued operations reflects the divestiture of our Infergen® product line to Valeant which was completed in December 2005. The loss from discontinued operations of $0.1 million and $0.3 million in the three month periods ended March 31, 2007 and 2006, respectively, is comprised primarily of product returns in excess of our initial estimates.
 
Income Taxes
 
We adopted the provisions of Financial Accounting Standards Board (“FASB”) Interpretation No. 48, Accounting for Uncertainty in Income Taxes — an interpretation of FASB Statement No. 109 (“FIN 48”) on January 1, 2007. FIN 48 requires companies to determine whether it is “more likely than not” that a tax position will be sustained upon examination by the appropriate taxing authorities before any tax benefit can be recorded in the financial statements. It also provides guidance on the recognition, measurement, classification and interest and penalties related to uncertain tax positions. The adoption of FIN 48 did not have an impact on our results of operations or financial condition. At the adoption date of January 1, 2007, we had no unrecognized tax benefits.


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Liquidity and Capital Resources
 
At March 31, 2007, we had available cash, cash equivalents and available-for-sale securities of $211.1 million. The primary objective of our investment activities is to preserve principal while at the same time maximizing yields without significantly increasing risk. To achieve this objective, we invest our excess cash in debt instruments of the U.S. federal and state governments and their agencies and high-quality corporate issuers, and, by policy, restrict our exposure to any single corporate issuer by imposing concentration limits.
 
Operating Activities
 
Cash used in operating activities was $4.3 million during the three-month period ended March 31, 2007, comprised primarily of a net loss of $20.8 million. This use of cash was offset by an increase in deferred revenue of approximately $9.2 million and a decrease in other assets of approximately $4.8 million. The increase in deferred revenue primarily consists of a $10.0 million milestone payment from Roche as part of our collaboration agreement with them and the decrease in other assets is primarily due to our collection of a $2.6 million note due from Valeant in connection with the divestiture of Infergen®. Details concerning the loss from operations can be found above in this Report under the heading “Results of Operations.”
 
Investing Activities
 
Cash provided by investing activities was $26.5 million during the three-month period ended March 31, 2007, comprised primarily of maturities of short-term investments totaling $43.9 million, partially offset by $20.1 million of short-term investment purchases. A portion of the $60.0 million in proceeds received from the Roche collaboration at the end of 2006 was invested in marketable securities classified as short term investments during the first quarter of 2007 in accordance with our investment objectives.
 
Financing Activities
 
Cash provided by financing activities of $2.4 million for the three-month period ended March 31, 2007 was due to the receipt of proceeds from issuances of common stock in connection with employee stock option exercises.
 
We do not have any “special purpose” entities that are unconsolidated in our financial statements. We have no commercial commitments with related parties. We have no loans with related parties, except for executive loans to Dr. Marianne Armstrong, our Chief Medical Affairs and Regulatory Officer in the amount of $0.1 million (retired May 2007), and Dr. Lawrence Blatt, our Chief Scientific Officer, in the amount of $0.1 million (retired May 2007). Both of these loans were in place prior to the enactment of the Sarbanes-Oxley Act in 2002.
 
We believe that we will continue to require substantial additional funding to complete the research and development activities currently contemplated and to commercialize our product candidates. We believe that our existing cash, cash equivalents and available-for-sale securities, together with anticipated cash flows from our operations, will be sufficient to fund our operating expenses, settlement with the government, debt obligations and capital requirements under our current business plan through at least the end of 2008. However, this forward-looking statement involves risks and uncertainties, and actual results could vary as a result of a number of factors, including the factors discussed under “Item 1A. Risk Factors.” This forward-looking statement is also based upon our current plans and assumptions, which may change, and our capital requirements, which may increase in future periods. Our future capital requirements will depend on many factors, including, but not limited to:
 
  •  sales of Actimmune® or any of our product candidates in development that receive commercial approval;
 
  •  our ability to partner our programs or products;
 
  •  the progress of our research and development efforts;
 
  •  the scope and results of preclinical studies and clinical trials;
 
  •  the costs, timing and outcome of regulatory reviews;
 
  •  determinations as to the commercial potential of our product candidates in development;


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  •  the pace of expansion of administrative expenses;
 
  •  the status of competitive products and competitive barriers to entry;
 
  •  the establishment and maintenance of manufacturing capacity through third-party manufacturing agreements;
 
  •  the establishment of collaborative relationships with other companies;
 
  •  the payments of annual interest on our long-term debt;
 
  •  the payments related to the Civil Settlement Agreement with the government;
 
  •  the timing and size of the payments we may receive from Roche pursuant to the Collaboration Agreement; and
 
  •  whether we must repay the principal in connection with our convertible debt obligations.
 
As a result, we may require additional funds and may attempt to raise additional funds through equity or debt financings, collaborative arrangements with corporate partners or from other sources. We have no commitments for such fund raising activities at this time. Additional funding may not be available to finance our operations when needed or, if available, the terms for obtaining such funds may not be favorable or may result in dilution to our stockholders.
 
Recent Accounting Pronouncements
 
In September 2006, the FASB issued Statement of Financial Accounting Standards No. 157 (“SFAS 157”), “Fair Value Measurements,” which defines fair value, establishes guidelines for measuring fair value and expands disclosures regarding fair value measurements. SFAS 157 does not require any new fair value measurements but rather eliminates inconsistencies in guidance found in various prior accounting pronouncements. SFAS 157 is effective for fiscal years beginning after November 15, 2007. Earlier adoption is permitted, provided the company has not yet issued financial statements, including for interim periods, for that fiscal year. We are currently evaluating the impact of SFAS 157, but do not expect the adoption of SFAS 157 to have a material impact on our consolidated financial position, results of operations or cash flows.
 
Item 3.   Quantitative and Qualitative Disclosures About Market Risk.
 
The securities in our investment portfolio are not leveraged, are classified as available-for-sale and are, due to their short-term nature, subject to minimal interest rate risk. We currently do not hedge interest rate exposure. Because of the short-term maturities of our investments, we do not believe that a change in market rates would have a significant negative impact on the value of our investment portfolio.
 
The primary objective of our investment activities is to preserve principal while at the same time maximizing yields without significantly increasing risk. To achieve this objective, we invest our excess cash in debt instruments of the U.S. federal and state governments and its agencies and high-quality corporate issuers, and, by policy, restrict our exposure to any single corporate issuer by imposing concentration limits. To minimize the exposure due to adverse shifts in interest rates we maintain investments of shorter effective maturities.


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The table below presents the principal amounts and weighted-average interest rates by year of maturity for our investment portfolio as of March 31, 2007 by effective maturity (in millions, except percentages):
 
                                                         
                                        Fair Value
 
                            2011 and
          at March 31,
 
    2007     2008     2009     2010     Beyond     Total     2007  
 
Assets:
                                                       
Available-for-sale securities
  $ 158.5     $ 28.0     $ 7.1                 $ 193.6     $ 194.7  
Average interest rate
    5.2 %     5.3 %     5.4 %                 5.2 %      
Liabilities:
                                                       
0.25% convertible senior notes due 2011
                          $ 170.0     $ 170.0     $ 218.5  
Average interest rate
                            .25 %     .25 %      
 
Foreign Currency Market Risk
 
We have had obligations denominated in euros for the purchase of Actimmune® inventory. In 2004, we used foreign currency forward contracts to partially mitigate this exposure, but did not enter into any new foreign currency forward contracts in 2005, 2006 or through March 31, 2007. We regularly evaluate the cost-benefit of entering into such arrangements, and presently have no foreign currency hedge agreements outstanding.
 
Item 4.   Controls and Procedures.
 
Evaluation of Disclosure Controls and Procedures.
 
As of the end of the period covered by this quarterly report on Form 10-Q, we evaluated the effectiveness of the design and operation of our disclosure controls and procedures, or “disclosure controls.” This controls evaluation was performed under the supervision and with the participation of management, including our Chief Executive Officer (“CEO”) and Chief Financial Officer (“CFO”). Disclosure controls are controls and procedures designed to reasonably assure that information required to be disclosed in our reports filed under the Exchange Act, such as this Report, is recorded, processed, summarized and reported within the time periods specified in the SEC’s rules and forms. Disclosure controls are also designed to reasonably ensure that such information is accumulated and communicated to our management, including the CEO and CFO, as appropriate, to allow timely decisions regarding required disclosure. Based upon the controls evaluation, our CEO and CFO have concluded that, as a result of the matters discussed below with respect to our internal control over financial reporting, our disclosure controls were effective as of the end of the period covered by this Report.
 
Internal Control Over Financial Reporting
 
Our management is responsible for establishing and maintaining adequate internal control over financial reporting (as defined in Rule 13a-15(f) under the Exchange Act). Our internal control system was designed to provide reasonable assurance to management and our board of directors regarding the reliability of financial reporting and preparation of published financial statements in accordance with generally accepted accounting principles.
 
Management assessed our internal control over financial reporting as of December 31, 2006, the end of our fiscal year, and concluded that our internal control over financial reporting was effective as of December 31, 2006. Management assessed our internal control over financial reporting as of March 31, 2007, the end of the period covered by this report. As a result of this assessment, management has concluded that our internal control over financial reporting was effective as of March 31, 2007. In making our assessment of internal control over financial reporting, we used the criteria issued in the report Internal Control-Integrated Framework by the Committee of Sponsoring Organizations of the Treadway Commission.


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Changes in Internal Control Over Financial Reporting
 
There have been no changes to our internal controls over financial reporting during the three months ended March 31, 2007 that have materially affected, or are reasonably likely to materially affect, our internal control over financial reporting.
 
CEO and CFO Certifications
 
Attached as exhibits to this Report, there are “Certifications” of the CEO and the CFO required by Rule 13a-14(a) of the Securities Exchange Act of 1934, or the Rule 13a-14(a) Certifications. This Controls and Procedures section of the Report includes the information concerning the controls evaluation referred to in the Rule 13a-14(a) Certifications and it should be read in conjunction with the Rule 13a-14(a) Certifications for a more complete understanding of the topics presented.
 
Limitations on the effectiveness of controls.
 
Our management, including our CEO and CFO, does not expect that our control systems will prevent all error and all fraud. A control system, no matter how well conceived and operated, can provide only reasonable, not absolute, assurance that the objectives of the control system are met. Further, the design of a control system must reflect the fact that there are resource constraints, and the benefits of controls must be considered relative to their costs. Because of the inherent limitations in all control systems, no evaluation of controls can provide absolute assurance that all control issues and instances of fraud, if any, within InterMune have been detected. These inherent limitations include the realities that judgments in decision-making can be faulty, and that breakdowns can occur because of simple error or mistake. Additionally, controls can be circumvented by the individual acts of some persons, by collusion of two or more people or by management override of the control. The design of any system of controls also is based in part upon certain assumptions about the likelihood of future events, and there can be no assurance that any design will succeed in achieving its stated goals under all potential future conditions. Over time, controls may become inadequate because of changes in conditions, or the degree of compliance with the policies or procedures may deteriorate. Because of the inherent limitations in a cost-effective control system, misstatements due to error or fraud may occur and not be detected. Accordingly, our disclosure controls and procedures are designed to provide reasonable, not absolute, assurance that the objectives of our disclosure control system are met and, as set forth above, our CEO and CFO have concluded, based on their evaluation as of the end of the period covered by this Report, that our disclosure controls and procedures were effective to provide reasonable assurance that the objectives of our disclosure control system were met.
 
PART II — OTHER INFORMATION
 
Item 1A.   Risk Factors.
 
An investment in our common stock is risky. Stockholders and potential investors in shares of our stock should carefully consider the following risk factors, which hereby summarize those risks contained in the “Risk Factors” section of our Annual Report on Form 10-K for the period ended December 31, 2006, in addition to other information and risk factors in this Report. See our Annual Report on Form 10-K for a more comprehensive set of risk factors. We are identifying these risk factors as important factors that could cause our actual results to differ materially from those contained in any written or oral forward-looking statements made by or on behalf of InterMune. We are relying upon the safe harbor for all forward-looking statements in this Report, and any such statements made by or on behalf of InterMune are qualified by reference to the following cautionary statements, as well as to those set forth elsewhere in this Report.
 
Risks Related to the Development of Our Products and Product Candidates
 
We may not succeed in our development efforts or in growing product revenue.
 
We commenced operations in 1998 and have incurred significant losses to date. Our revenue has been limited primarily to sales of Actimmune® derived from physicians’ prescriptions for the off-label use of Actimmune® in the


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treatment of IPF. Although we are developing pirfenidone for the treatment of IPF, pirfenidone will not be marketed for any diseases before 2010, if at all.
 
We may fail to develop our products on schedule, or at all, for the reasons stated in “Risks Related to the Development of Our Products and Product Candidates”. If this were to occur, our costs would increase and our ability to generate revenue could be impaired. In addition, we may need to raise capital in amounts greater than we anticipate in order to continue our development activities as planned. If additional capital is not available, we may be forced to curtail our development activities or cease operations.
 
Clinical development is a long, expensive and uncertain process, and delay or failure can occur at any stage of any of our clinical trials.
 
To gain approval to market a product for treatment of a specific disease, we must provide the FDA and foreign regulatory authorities with clinical data that demonstrate the safety and statistically significant efficacy of that product for the treatment of the disease. Clinical development is a long, expensive and uncertain process, and delay or failure can occur at any stage of any of our clinical trials. A number of companies in the pharmaceutical industry, including biotechnology companies, have suffered significant setbacks in advanced clinical trials, even after promising results in earlier trials. Success in preclinical testing and early clinical trials does not ensure that later clinical trials will be successful. For example, we have decided to end our development of Actimmune® for patients with IPF as a result of our decision to discontinue the INSPIRE trial on the recommendation of the study’s independent data monitoring committee. As a result, we do not intend to conduct further development of Actimmune® for the treatment of IPF. In addition, we reported that our exploratory Phase II clinical trial evaluating Actimmune® for the potential treatment of advanced liver fibrosis caused by HCV in patients who have failed standard antiviral therapy failed to meet its primary endpoint. As a result, we do not intend to conduct further development of Actimmune® for the treatment of liver fibrosis.
 
We currently depend upon one collaboration partner, Roche, for support in the development and commercialization of our HCV product candidates. If our collaboration agreement with Roche terminates, our business and, in particular, the development and commercialization of our HCV product candidates would be significantly harmed.
 
On October 16, 2006, we entered into the Collaboration Agreement with Roche. Under the Collaboration Agreement, we will collaborate with Roche to develop and commercialize products from our HCV protease inhibitor program. The Collaboration Agreement includes our lead candidate compound ITMN-191, which is currently expected to enter clinical trials before the end of 2006. We will also collaborate with Roche on a research program to identify, develop and commercialize novel second-generation HCV protease inhibitors. Assuming we continue to successfully develop and commercialize these product candidates, under the terms of the Collaboration Agreement, we are entitled to receive reimbursement and sharing of expenses incurred in connection with the development of these product candidates and additional milestone payments from Roche. In addition, if any of the product candidates we have licensed to Roche are approved for commercialization, we anticipate receiving proceeds in connection with the sales of such products. After April 30, 2007, Roche may terminate the Collaboration Agreement in its entirety, in any country, subject to certain limitations for major countries, or with respect to any product or product candidate licensed under the Collaboration Agreement for any reason on six months’ written notice. If the Collaboration Agreement is terminated in whole or in part and we are unable to enter into similar arrangements with other collaborators, our business could be materially adversely affected.
 
If Roche fails to perform its obligations under the Collaboration Agreement, we may not be able to successfully commercialize our product candidates licensed to Roche and the development and commercialization of our product candidates could be delayed, curtailed or terminated.
 
Under the Collaboration Agreement, if marketing authorization is obtained, we will co-promote or co-market with Roche our lead candidate compound ITMN-191, and/or any other product candidates licensed to Roche, as applicable, in the United States and Roche will market and sell ITMN-191 and/or any other product candidates licensed to Roche, throughout the rest of the world. Roche will also be responsible for the manufacturing of the global commercial supply for ITMN-191 and/or any other product candidates licensed to Roche. As a result, we will


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depend upon the success of the efforts of Roche to manufacture, market and sell ITMN-191, and/or any other product candidates if approved. However, we have little to no control over the resources that Roche may devote to such manufacturing and commercialization efforts and, if Roche does not devote sufficient time and resources to such efforts, we may not realize the commercial benefits that we anticipate, and our results of operations may be adversely affected.
 
If we materially breach the representations and warranties we made to Roche under the Collaboration Agreement or any of our other contractual obligations, Roche has the right to seek indemnification from us for damages it suffers as a result of such breach. These amounts could be substantial.
 
We have agreed to indemnify Roche and its affiliates against losses suffered as a result of our material breach of representations and warranties and our other obligations in the Collaboration Agreement. If one or more of our representations and warranties were not true at the time we made them to Roche, we would be in breach of the Collaboration Agreement. In the event of a breach by us, Roche has the right to seek indemnification from us for damages suffered by Roche as a result of such breach. The amounts for which we could become liable to Roche may be substantial.
 
Roche has the right under certain circumstances to market and sell products that compete with our product candidates that we have licensed to Roche, and any competition by Roche could have a material adverse effect on our business.
 
Roche has agreed that, except as set forth in the Collaboration Agreement, it will not develop or commercialize certain specific competitive products during the exclusivity period, which extends only until October 2011 at the latest. However if neither ITMN-191 nor any other product candidate is in clinical development, Roche may develop or commercialize such certain specific competitive products; provided if they do, we will have the right to terminate the Collaboration Agreement. Accordingly, Roche may under certain circumstances develop or commercialize competitive products. Roche has significantly greater financial, technical and human resources than we have and they are better equipped to discover, develop, manufacture and commercialize products. In addition, Roche has more extensive experience in preclinical studies and clinical trials, obtaining regulatory approvals and manufacturing and marketing pharmaceutical products. In the event that Roche competes with us, our business could be materially and adversely affected.
 
Risks Related to Government Regulation and Approval of our Products and Product Candidates
 
If we fail to fulfill our obligations under the Deferred Prosecution Agreement with the U.S. Department of Justice or the Corporate Integrity Agreement with the Office of Inspector General of the United States Department of Health and Human Services it could have a material adverse effect on our business.
 
On October 26, 2006, we announced that we entered into a Deferred Prosecution Agreement with the United States Attorney’s Office for the Northern District of California and a Corporate Integrity Agreement with the Office of the Inspector General of the United States Department of Health and Human Services. Under the terms of the Deferred Prosecution Agreement, the United States Attorney’s Office for the Northern District of California filed an Information charging InterMune with one count of off-label promotion of Actimmune® for use with IPF, but has agreed to defer prosecution of such charge during the two year term of the Deferred Prosecution Agreement. The U.S. Attorney will seek dismissal of the Information after the two year period if we comply with the provisions of the Deferred Prosecution Agreement. Under the terms of the Corporate Integrity Agreement, the Office of the Inspector General of the United States Department of Health and Human Services has agreed to waive any potential exclusion against us from participation in federal health care programs provided that we comply with the terms of the Corporate Integrity Agreement for a period of five years. If we do not satisfy our obligations under the Deferred Prosecution Agreement, the U.S. Attorney can proceed with the prosecution against us for actions involving the off-label promotion of Actimmune® for use with IPF, as set forth in the Information, and may consider additional actions against us, which could have significant adverse effects on our operations and financial results. If we do not satisfy our obligations under the Corporate Integrity Agreement, the Office of the Inspector General of the United States Department of Health and Human Services could potentially exclude us from participation in federal health care programs, which could have significant adverse effects on our operations and financial results.


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Risks Related to Our Intellectual Property Rights
 
We may not be able to obtain, maintain and protect certain proprietary rights necessary for the development and commercialization of our products or product candidates.
 
Our commercial success will depend in part on obtaining and maintaining patent protection on our products and product candidates and successfully defending these patents against third-party challenges. Our ability to commercialize our products will also depend in part on the patent positions of third parties, including those of our competitors. The patent positions of pharmaceutical and biotechnology companies can be highly uncertain and involve complex legal and factual questions. No consistent policy regarding the breadth of claims allowed in biotechnology patents has emerged to date. Accordingly, we cannot predict with certainty the scope and breadth of patent claims that may be afforded to other companies’ patents. We could incur substantial costs in litigation if we are required to defend against patent suits brought by third parties, or if we initiate suits to protect our patent rights.
 
The degree of future protection for our proprietary rights is uncertain, and we cannot ensure that:
 
  •  we were the first to make the inventions covered by each of our pending patent applications;
 
  •  we were the first to file patent applications for these inventions;
 
  •  others will not independently develop similar or alternative technologies or duplicate any of our technologies;
 
  •  any of our pending patent applications will result in issued patents;
 
  •  any of our issued patents or those of our licensors will be valid and enforceable;
 
  •  any patents issued to us or our collaborators will provide a basis for commercially viable products or will provide us with any competitive advantages or will not be challenged by third parties;
 
  •  we will develop additional proprietary technologies that are patentable; or
 
  •  the patents of others will not have a material adverse effect on our business.
 
Others have filed and in the future may file patent applications covering uses and formulations of interferon gamma-1b, a pegylated version of this product, and other products in our development program. If a third party has been or is in the future issued a patent that blocked our ability to commercialize any of our products, alone or in combination, for any or all of the diseases that we are targeting, we would be prevented from commercializing that product or combination of products for that disease or diseases unless we obtained a license from the patent holder. We may not be able to obtain such a license to a blocking patent on commercially reasonable terms, if at all. If we cannot obtain, maintain and protect the necessary proprietary rights for the development and commercialization of our products or product candidates, our business and financial prospects will be impaired.
 
Litigation or third-party claims of intellectual property infringement could require us to spend substantial time and money and could adversely affect our ability to develop and commercialize products.
 
Our commercial success depends in part on our ability and the ability of our collaborators to avoid infringing patents and proprietary rights of third parties. As noted in the immediately preceding risk factor, third parties may accuse us or our collaborators of employing their proprietary technology in our products, or in the materials or processes used to research or develop our products, without authorization. Any legal action against our collaborators or us claiming damages and/or seeking to stop our commercial activities relating to the affected products, materials and processes could, in addition to subjecting us to potential liability for damages, require our collaborators or us to obtain a license to continue to utilize the affected materials or processes or to manufacture or market the affected products. We cannot predict whether we, or our collaborators, would prevail in any of these actions or whether any license required under any of these patents would be made available on commercially reasonable terms, if at all. If we are unable to obtain such a license, we, or our collaborators, may be unable to continue to utilize the affected materials or processes or manufacture or market the affected products or we may be obligated by a court to pay substantial royalties and/or other damages to the patent holder. Even if we are able to obtain such a license, the terms of such a license could substantially reduce the commercial value of the affected product or products and impair our prospects for profitability. Accordingly, we cannot


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predict whether or to what extent the commercial value of the affected product or products or our prospects for profitability may be harmed as a result of any of the liabilities discussed above. Furthermore, infringement and other intellectual property claims, with or without merit, can be expensive and time-consuming to litigate and can divert management’s attention from our core business.
 
Risks Related to Our Financial Results and Other Risks Related to Our Business
 
If physicians do not prescribe Actimmune® or prescribe it less often for the treatment of IPF, our revenue will decline at an unknown rate.
 
Physicians may choose not to prescribe Actimmune® or provide fewer patient referrals for Actimmune® for the treatment of IPF because:
 
  •  Actimmune® is not, nor will it be approved by the FDA for the treatment of IPF, and we therefore are unable to market or promote Actimmune® for the treatment of IPF;
 
  •  in our initial and Phase III INSPIRE clinical trials, Actimmune® failed to meet the primary and secondary endpoints;
 
  •  physicians prefer to enroll their patients in another trial for the treatment of IPF, including our Phase III pirfenidone trials;
 
  •  Actimmune® does not have a drug compendia listing, often a criterion used by third-party payors to decide whether or not to reimburse off-label prescriptions;
 
  •  physicians’ patients are unable to receive or lose reimbursement from a third-party reimbursement organization;
 
  •  physicians are not confident that Actimmune® has a clinically significant treatment effect for IPF;
 
  •  a competitor’s product shows a clinically significant treatment effect for IPF; or
 
Failure to accurately forecast our revenue could result in additional charges for excess inventories or non-cancelable purchase obligations.
 
We base many of our operating decisions on anticipated revenue trends and competitive market conditions, which are difficult to predict. Based on projected revenue trends, we acquired inventories and entered into non-cancelable purchase obligations in order to meet anticipated increases in demand for our products. However, more recent projected revenue trends resulted in us recording charges of $9.1 million during 2005 for excess inventories from previous years’ contractual purchases. If revenue levels experienced in future quarters are substantially below our expectations, especially revenue from sales of Actimmune®, we could be required to record additional charges for excess inventories and/or non-cancelable purchase obligations.
 
Failure to attract, retain and motivate skilled personnel and cultivate key academic collaborations will delay our product development programs and our business development efforts.
 
We had 149 full-time employees as of April 30, 2007, and our success depends on our continued ability to attract, retain and motivate highly qualified management and scientific personnel and on our ability to develop relationships with leading academic scientists. Competition for personnel and academic collaborations is intense. We are highly dependent on our current management and key scientific and technical personnel, including Daniel G. Welch, our Chief Executive Officer and President, as well as the other principal members of our management. None of our employees, including members of our management team, has a long-term employment contract, and any of our employees can leave at any time. Our success will depend in part on retaining the services of our existing management and key personnel and attracting and retaining new highly qualified personnel. In addition, we may need to hire additional personnel and develop additional academic collaborations if we expand our research and development activities. We do not know if we will be able to attract, retain or motivate personnel or cultivate academic collaborations. Our inability to hire, retain or motivate qualified personnel or cultivate academic collaborations would harm our business.


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Item 6.   Exhibits.
 
         
Exhibit
   
Number
 
Description of Document
 
  3 .1   Amended and Restated Certificate of Incorporation of InterMune.(1)
  3 .2   Certificate of Ownership and Merger, dated April 26, 2001.(2)
  3 .3   Bylaws of InterMune.(1)
  3 .4   Certificate of Amendment of Amended and Restated Certificate of Incorporation of InterMune.(3)
  3 .5   Certificate of Amendment of Amended and Restated Certificate of Incorporation of InterMune.(4)
  31 .1   Certification required by Rule 13a-14(a) or Rule 15d-14(a).(5)
  31 .2   Certification required by Rule 13a-14(a) or Rule 15d-14(a).(5)
  32 .1*   Certification required by Rule 13a-14(b) or Rule 15d-14(b) and Section 1350 of Chapter 63 of Title 18 of the United States Code (18 U.S.C. § 1350).(5)
 
 
(1) Filed as an exhibit to InterMune’s Registration Statement on Form S-1 filed with the Securities and Exchange Commission on February 2, 2000 (No. 333-96029), as amended by Amendment No. 1 filed with the Commission on February 18, 2000, as amended by Amendment No. 2 filed with the Commission on March 6, 2000, as amended by Amendment No. 3 filed with the Commission on March 22, 2000, as amended by Amendment No. 4 filed with the Commission on March 23, 2000 and as amended by Amendment No. 5 filed with the Commission on March 23, 2000.
 
(2) Filed as an exhibit to InterMune’s Quarterly Report on Form 10-Q for the quarter ended September 30, 2001.
 
(3) Filed as an exhibit to InterMune’s Quarterly Report on Form 10-Q for the quarter ended September 30, 2003.
 
(4) Filed as an exhibit to InterMune’s Quarterly Report on Form 10-Q for the quarter ended September 30, 2004.
 
(5) Filed herewith.
 
* This certification accompanies the Periodic Report pursuant to Section 906 of the Sarbanes-Oxley Act of 2002 and shall not be deemed “filed” by the Company for purposes of Section 18 of the Securities Exchange Act of 1934, as amended.


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SIGNATURES
 
Pursuant to the requirements of the Securities Exchange Act of 1934, as amended, the registrant has duly caused this report to be signed on its behalf by the undersigned thereunto duly authorized.
 
InterMune, Inc.
 
  By: 
/s/  Bruce Tomlinson
Vice President, Controller and
Principal Accounting Officer
 
Date: May 9, 2007


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INDEX TO EXHIBITS
 
         
Exhibit
   
Number
 
Description of Document
 
  3 .1   Amended and Restated Certificate of Incorporation of InterMune.(1)
  3 .2   Certificate of Ownership and Merger, dated April 26, 2001.(2)
  3 .3   Bylaws of InterMune.(1)
  3 .4   Certificate of Amendment of Amended and Restated Certificate of Incorporation of InterMune.(3)
  3 .5   Certificate of Amendment of Amended and Restated Certificate of Incorporation of InterMune.(4)
  31 .1   Certification required by Rule 13a-14(a) or Rule 15d-14(a).(5)
  31 .2   Certification required by Rule 13a-14(a) or Rule 15d-14(a).(5)
  32 .1*   Certification required by Rule 13a-14(b) or Rule 15d-14(b) and Section 1350 of Chapter 63 of Title 18 of the United States Code (18 U.S.C. § 1350).(5)
 
 
(1) Filed as an exhibit to InterMune’s Registration Statement on Form S-1 filed with the Securities and Exchange Commission on February 2, 2000 (No. 333-96029), as amended by Amendment No. 1 filed with the Commission on February 18, 2000, as amended by Amendment No. 2 filed with the Commission on March 6, 2000, as amended by Amendment No. 3 filed with the Commission on March 22, 2000, as amended by Amendment No. 4 filed with the Commission on March 23, 2000 and as amended by Amendment No. 5 filed with the Commission on March 23, 2000.
 
(2) Filed as an exhibit to InterMune’s Quarterly Report on Form 10-Q for the quarter ended September 30, 2001.
 
(3) Filed as an exhibit to InterMune’s Quarterly Report on Form 10-Q for the quarter ended September 30, 2003.
 
(4) Filed as an exhibit to InterMune’s Quarterly Report on Form 10-Q for the quarter ended September 30, 2004.
 
(5) Filed herewith.
 
* This certification accompanies the Periodic Report pursuant to Section 906 of the Sarbanes-Oxley Act of 2002 and shall not be deemed “filed” by the Company for purposes of Section 18 of the Securities Exchange Act of 1934, as amended.